miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|308790848|gb|HO797157.1|HO797157 AGAGTCTCTTGCGCTACGTTTGGCATCGGTGGCTGAGAAAACGGTGTAAACAAGGACAAAGGTGCCAACAATTTCAGCCC
CAAGTCCGTCACCTTTTGTGTAACCAGGGGCAACAAAGTTAGCGCCACCGTTCAATGCACCGTATCTGGTTTTTCCCTCG
AAACCCTTCACCACTCCAGCGCCAGCGATAGCACCCAACACTTGCATCACTATGTAGAACAACGCCCTTGACAATAAATT
AAACAAAATCCTATACATGATTGATCTTTCTTTTGCAGAGTGAACGCCCTATCAAATGAGAAACAAACTATCAGCTACCC
AATGCATTTTAGTTAACAAAAGGCTGCAATTTACATGCAGCTATTGATTCAAGAATCCACGTGTGACCAATCACTTGTAA
AGTATTAGCAGCTAAATCCTCTGCGTCGTTTAGCCTTTGCCAGAGAATTGATACTTCTTCCCCCAACTTGCATCCTTGTG
GGGGATCAAGGTTGTAAACAACCAGCAACTTTGAAGAATTCAGTTTGCATTCCTGTCTTTGCGCTTCCAATTCTTCCTTG
CTTCTCAAAACAGTGCCTCCACCCACTTCAATCAATTCTTCAAGATCTTCCTTATAAGTTGACACATAATCCCCAGAAAA
ATAAAATTTTAAGCTACTGAATAGCTTTGGCTCATTGGCCAATGCCCTAAGTCTGCCAGCTCTTGGGCCACCTTGACACC
TTGGTTGTCAACACCAATTTCATATGGTTGTTCTTCTACAGGATTTTTCTCTTCCATGCATGCTTTTATCCAATCCAATT
TTAGAACCCATCGTCCATTTAGAATAGCCATGAGAACTTTCAATGTCCTGGAGCATGCTCCATTTGCATCAGTTGATGCA
ATTACATGTGTAACATTTGAGGTCCAGAATTTTGTCACAGTTGCACCAATCATGCTTGCATAATCTATCAAAAGTACCTT
TTCTTCATTTGATAAAGCAGATCCACAGAAAACCATATTTTTACAATCATCCTGTGAAGCTTCATGAGTATTTGAGTTGT
GAGATGACAGGTGAGACAAATTGGGATGCTTCCGAGCTGCCTGTTTCTTAGGCCTGGATTTCTCACATGGAAATTTGACA
TTTGAATGGAGGGGACAGAGCAAAAGAAAGTCCTCATGATCCCAACGACAAGTTGAGATGTCCATTGCACAAGGAACATG
ATAAGTTCTTCTGCATGATTTGACATAGCAACCAAGAGCTGCTCCCTTTAGATTACATTTACTGCATTTAAGTTTTGCTC
CCCTGGCCAACTCTGCCTTCAGATTCTTAACCACTTCACCGACAAAGTACACTTGTGGTGCCCAGTCAATACAACTTCTG
TGCACAGGAATAACATTTGGCTTCATTGCTGCATCTCCACTAACTAAGTTTCCATTAGCATAATGCAGCATTGGTCCAGT
AACCTCGGAGGTTTTAGAAGATTGGCAAAATGAACAGATACTTCCAGTTGGAGAAAAGTCATTTGGAGCATCTGTTGCCA
ATTGTGCACCAGGGTCCTTTCCAGATTTATGGTCAATAATTTTCTGTCTCTTGGTATCCCTTTCAAGACCCTCAGTTTCA
GAGGCTGAACTTTCTGACCTTAATTGTCCCATTTTCTCGTTCAAATTTACATTTCCTGTACTAGCTCTCTTTAAGGAAGA
ATTACCCAGTCTATCAGGAGGTAAT




Most similar to sp|Q8RXD4|BRCA1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog
            OS=Arabidopsis thaliana GN=BRCA1 PE=2 SV=1
          Length = 941

 Score =  314 bits (804), Expect = 1e-84
 Identities = 161/387 (41%), Positives = 229/387 (59%), Gaps = 10/387 (2%)
 Frame = -2

Query: 1477 CSFCQSSKTSEVTGPMLHYANGNLVSGDAAMKPNVIPVHRSCIDWAPQVYFVGEVVKNLK 1298
            C+FCQ S+ +E +G M HY  G  VS D      VI VH++C +WAP VYF    + NL 
Sbjct: 564  CAFCQCSEDTEASGEMTHYYRGEPVSADFNGGSKVIHVHKNCAEWAPNVYFNDLTIVNLD 623

Query: 1297 AELARGAKLKCSKCNLKGAALGCYVKSCRRTYHVPCAMDISTCRWDHEDFLLLCPLHSNV 1118
             EL R  ++ CS C LKGAALGCY KSC+ ++HV CA  I  CRWD+  F++LCPL +++
Sbjct: 624  VELTRSRRISCSCCGLKGAALGCYNKSCKNSFHVTCAKLIPECRWDNVKFVMLCPLDASI 683

Query: 1117 KFPCEKSRPKKQAARKHPXXXXXXXXXXNTHEASQDDC---------KNMVFCGSALSNE 965
            K PCE++  K +  ++ P           + +A+  +          K +V   S L+ E
Sbjct: 684  KLPCEEANSKDRKCKRTPKEPLHSQPKQVSGKANIRELHIKQFHGFSKKLVLSCSGLTVE 743

Query: 964  EKVLLIDYASMIGATVTKFWTSNVTHVIASTDANGACSRTLKVLMAILNGRWVLKLDWIK 785
            EK ++ ++A + G T++K W S VTHVIAS + NGAC RTLK +MAIL G+W+L +DWIK
Sbjct: 744  EKTVIAEFAELSGVTISKNWDSTVTHVIASINENGACKRTLKFMMAILEGKWILTIDWIK 803

Query: 784  ACMEEKNPVEEQPYEIGVDNQGCQGGPRAGRLRALANEPKLFSSLKFYFSGDYVSTYKED 605
            ACM+    V E+PYEI +D  G + GP  GR RAL  +PKLF+ LKFY  GD+   YK  
Sbjct: 804  ACMKNTKYVSEEPYEITMDVHGIREGPYLGRQRALKKKPKLFTGLKFYIMGDFELAYKGY 863

Query: 604  LEELIEVGGGTVLRSKEELEAQRQECKLNSSKLLVVYNLDPPQGCKLGEEVSILWQRLND 425
            L++LI   GGT+LR +            N +  +VV++++P        +   L QR +D
Sbjct: 864  LQDLIVAAGGTILRRRPVSSDD------NEASTIVVFSVEP-------SKKKTLTQRRSD 910

Query: 424  AEDLAANT-LQVIGHTWILESIAACKL 347
            AE LA +   +    +W+L+SIA C++
Sbjct: 911  AEALAKSARARAASSSWVLDSIAGCQI 937